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rigid registration algorithm  (MathWorks Inc)


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    MathWorks Inc rigid registration algorithm
    Rigid Registration Algorithm, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 2947 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/imaging+algorithms/Image+Processing+Toolbox/pm41935846-79-1-6
    Average 96 stars, based on 2947 article reviews
    rigid registration algorithm - by Bioz Stars, 2026-10
    96/100 stars

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    Article Title: Protocol for quantitative reconstruction of cell lineage using mosaic analysis with double markers in mice.
    Article Snippet: Cheung et al., STAR Protocols The generation of diverse cell types during development is fundamental to brain functions.. We outline a protocol to quantitatively assess the clonal output of individual neural progenitors using mosaic analysis with double markers (MADM) in mice.. We first describe steps to acquire and reconstruct adult MADM clones in the superior colliculus.

    Article Title: Exploring protocol development: Implementing systematic contextual memory to enhance real-time fMRI neurofeedback
    Article Snippet: The first two scans were used in a Matlab/SPM batch fMRI-space adaptation algorithm.

    Article Title: Metabolic modulation to improve MSC expansion and therapeutic potential for articular cartilage repair
    Article Snippet: Images were analyzed with MATLAB (The MathWorks Inc.) using an imaging-based MATLAB algorithm to obtain suspended cell diameters.

    Software:

    Article Title: Aminergic and peptidergic modulation of Insulin-Producing Cells in Drosophila
    Article Snippet: .. DOI: https://doi.org/10.7554/eLife.99548 21 of 31 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Goat anti- rabbit Alexa Fluor 555 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2535849 Diluted 1:200 Antibody Goat anti- mouse Alexa Fluor 635 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2536184 Diluted 1:400 Chemical compound SigmaCote Sigma- Aldrich cat. no. SL2; RRID:SCR_008988 siliconizing reagent Chemical compound Vectashield Antifade Mounting Medium VEC- H- 1000 Biozol - Chemical compound all- trans- retinal Sigma- Aldrich R2500 Used in optogenetic experiments Software, algorithm OCULAR OCULAR Image acquisition software (patch clamp) Software, algorithm Micro- Manager 2.0 for Image J Edelstein et al., 2014 Image acquisition software (calcium imaging) Software, algorithm pCLAMP 10 Molecular Devices Used for recordings (Optogenetic activation and patch clamp) Software, algorithm MATLAB R2021a The Mathworks Used for data analysis and statistical testing Software, algorithm Jupyter Notebook Project Jupyter Pre- processing of calcium imaging data BDSC = Bloomington Drosophila Stock Center. ..

    Article Title: Auditory cortex encodes lipreading information through spatially distributed activity.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data iEEG data, fMRI data, and scripts This paper https://doi.org/10.7302/0xb6-8855 Experimental models: Organisms/strains Human subjects Paid subjects; human volunteers HUM00118869, HUM00119987 Software and algorithms MATLAB 2022b The Mathworks https://www.mathworks.com Psychtoolbox 3 Kleiner et al.60 https://psychtoolbox.org SPM12 Wellcome Department of Imaging Neuroscience, University College London https://www.fil.ion.ucl.ac.uk/spm Freesurfer MGH https://surfer.nmr.mgh.harvard.edu/ ..


    Article Title: Auditory entrainment coordinates cortical-BNST-NAc triple time locking to alleviate the depressive disorder.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains Human subject Ruijin Hospital of the Shanghai Jiaotong University School of Medicine Table S1 Software and algorithms MATLAB R2022a The MathWorks Inc., Natick, USA RRID:SCR_001622 MATLAB toolbox filedtrip Oostenveld et al.44 https://www.fieldtriptoolbox.org MATLAB toolbox lead-DBS Neudorfer et al.45 RRID:SCR_002915 MATLAB oscillation analysis This paper See the code provided in the supplemental file MATLAB Deep Learning toolbox The MathWorks Inc., Natick, USA https://www.mathworks.com/products/deep-learning.html Adobe Auditor Adobe Audition, USA RRID:SCR_015796 NeuroExplorer Plexon, USA RRID:SCR_001818 Other EEG recording device Brain Products, Germany RRID:SCR_009443 CT scan device Philips CT, Netherlands N/A MRI scan device Philips 3.0T, Netherlands N/A Naturalistic Music EEG Dataset Miyapuram et al.33 https://exhibits.stanford.edu/data/catalog/jn859kj8079 Headphones Philips Audio, SHP9500 N/A Hamilton Depression Rating Scale Zheng et al.46 https://doi.org/10.1192/bjp.152.5.660 Symphony No. 6 in B minor, Op. ..

    Article Title: Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Alexa Fluor-488 goat anti-rabbit IgG secondary antibody Thermo Fisher Scientific Cat# A32731, RRID: AB_2633280 Rat monoclonal primary antibody against mouse CD68 Bio-Rad Cat# MCA1957GA, RRID: AB_324217 Rabbit polyclonal primary antibody against Iba1 FUJIFILM Cat# 019-19741, RRID: AB_839504 Alexa Fluor-555 goat anti-rabbit IgG secondary Thermo Fisher Scientific Cat# A32732, RRID: AB_2633281 Alexa Fluor-405 goat anti-rat IgG secondary antibody Abcam Cat# ab175671, RRID: AB_2890626 Bacterial and virus strains AAV9-Ef1alpha-DIO-hChR2(ET/TC)-eYFP https://www.nature.com/articles/nmeth.1808 Addgene AAV9; 35507-AAV9 pCAG_PSD95.FingR-eGFP-CCR5TC https://www.sciencedirect.com/science/ article/pii/S089662731300319X Addgene AAV9; 46295-AAV9 Chemicals, peptides, and recombinant proteins Pexidartinib (PLX3397) Hölzel Diagnostika Cat# HY-16749 Clodronate disodium salt Millipore Cas# 88416-50-6 Deposited data Extracellular recording data and sorted single unit data This paper https://doi.org/10.12751/g-node.sq1cxy Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy Experimental models: Organisms/strains Mouse: C57Bl/6J Universit€atsklinikum Hamburg- Eppendorf– Animal facility Mouse: C57Bl/6J Mouse: Dlx5/6-Cre (Tg(dlx5a-cre)1Mekk/J Jackson Laboratory RRID: IMSR_JAX:008199 Recombinant DNA pAAV-CAG- 2AtDimer2 Donated by the Oertner lab N/A Software and algorithms Matlab R2019a, R2021a MathWorks RRID:SCR_001622 ImageJ 2.0.0 ImageJ RRID:SCR_003070 R Statistical Software 3.5.1 R Project for Statistical Computing RRID:SCR_001905 Cheetah 6 Neuralynx http://neuralynx.com/ Anaconda 1.9.6 Conda RRID:SCR_018317 Spyder 5.1.5 Spyder RRID:SCR_017585 Jupyter 6.0.0 Jupyter Notebook RRID:SCR_018315 Video Mot2 TSE Systems https://www.tsesystems.com/ productdetails/videomot uEye Cockpit iDS Imaging https://en.ids-imaging.com/ ids-software-suite.html phy Cortex lab https://github.com/cortex-lab/phy klusta Cortex lab https://github.com/kwikteam /klusta ezTrack Cai lab https://github.com/denisecailab/ezTrack Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy (Continued on next page) Neuron 112, 421–440.e1–e7, February 7, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Other Arduino Uno SMD Arduino A000073 Digital Lynx 4SX Neuralynx http://neuralynx.com/ Diode laser (473 nm) Omicron LuxX 473-100 Electroporation device BEX CUY21EX Electroporation tweezer-type paddles Protech CUY650-P5 Recording optrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703-OA16LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-50-703 LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703 LP Recording electrode (1 shank, 16 channels) Neuronexus CM1x16-3mm-100-703 LP Head-stage Neuralynx HS-16-N2T-CNR-MDR50 Confocal microscope Zeiss LSM 700 Mobile HomeCage Neurotar Mobile HomeCage Large with tracking capability Floating foam maze Neurotar Assembled foam sociability cage Lightweight stainless-steel head plates Neurotar Model 3, round 6,2 mm opening Headpost stand Luigs & Neumann 200-200 500 1100 Head post - S (for mice) Luigs & Neumann 200-100 500 2203 ll OPEN ACCESS Article

    Patch Clamp:

    Article Title: Aminergic and peptidergic modulation of Insulin-Producing Cells in Drosophila
    Article Snippet: .. DOI: https://doi.org/10.7554/eLife.99548 21 of 31 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Goat anti- rabbit Alexa Fluor 555 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2535849 Diluted 1:200 Antibody Goat anti- mouse Alexa Fluor 635 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2536184 Diluted 1:400 Chemical compound SigmaCote Sigma- Aldrich cat. no. SL2; RRID:SCR_008988 siliconizing reagent Chemical compound Vectashield Antifade Mounting Medium VEC- H- 1000 Biozol - Chemical compound all- trans- retinal Sigma- Aldrich R2500 Used in optogenetic experiments Software, algorithm OCULAR OCULAR Image acquisition software (patch clamp) Software, algorithm Micro- Manager 2.0 for Image J Edelstein et al., 2014 Image acquisition software (calcium imaging) Software, algorithm pCLAMP 10 Molecular Devices Used for recordings (Optogenetic activation and patch clamp) Software, algorithm MATLAB R2021a The Mathworks Used for data analysis and statistical testing Software, algorithm Jupyter Notebook Project Jupyter Pre- processing of calcium imaging data BDSC = Bloomington Drosophila Stock Center. ..

    Imaging:

    Article Title: Aminergic and peptidergic modulation of Insulin-Producing Cells in Drosophila
    Article Snippet: .. DOI: https://doi.org/10.7554/eLife.99548 21 of 31 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Goat anti- rabbit Alexa Fluor 555 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2535849 Diluted 1:200 Antibody Goat anti- mouse Alexa Fluor 635 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2536184 Diluted 1:400 Chemical compound SigmaCote Sigma- Aldrich cat. no. SL2; RRID:SCR_008988 siliconizing reagent Chemical compound Vectashield Antifade Mounting Medium VEC- H- 1000 Biozol - Chemical compound all- trans- retinal Sigma- Aldrich R2500 Used in optogenetic experiments Software, algorithm OCULAR OCULAR Image acquisition software (patch clamp) Software, algorithm Micro- Manager 2.0 for Image J Edelstein et al., 2014 Image acquisition software (calcium imaging) Software, algorithm pCLAMP 10 Molecular Devices Used for recordings (Optogenetic activation and patch clamp) Software, algorithm MATLAB R2021a The Mathworks Used for data analysis and statistical testing Software, algorithm Jupyter Notebook Project Jupyter Pre- processing of calcium imaging data BDSC = Bloomington Drosophila Stock Center. ..

    Article Title: Auditory cortex encodes lipreading information through spatially distributed activity.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data iEEG data, fMRI data, and scripts This paper https://doi.org/10.7302/0xb6-8855 Experimental models: Organisms/strains Human subjects Paid subjects; human volunteers HUM00118869, HUM00119987 Software and algorithms MATLAB 2022b The Mathworks https://www.mathworks.com Psychtoolbox 3 Kleiner et al.60 https://psychtoolbox.org SPM12 Wellcome Department of Imaging Neuroscience, University College London https://www.fil.ion.ucl.ac.uk/spm Freesurfer MGH https://surfer.nmr.mgh.harvard.edu/ ..

    Article Title: Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Alexa Fluor-488 goat anti-rabbit IgG secondary antibody Thermo Fisher Scientific Cat# A32731, RRID: AB_2633280 Rat monoclonal primary antibody against mouse CD68 Bio-Rad Cat# MCA1957GA, RRID: AB_324217 Rabbit polyclonal primary antibody against Iba1 FUJIFILM Cat# 019-19741, RRID: AB_839504 Alexa Fluor-555 goat anti-rabbit IgG secondary Thermo Fisher Scientific Cat# A32732, RRID: AB_2633281 Alexa Fluor-405 goat anti-rat IgG secondary antibody Abcam Cat# ab175671, RRID: AB_2890626 Bacterial and virus strains AAV9-Ef1alpha-DIO-hChR2(ET/TC)-eYFP https://www.nature.com/articles/nmeth.1808 Addgene AAV9; 35507-AAV9 pCAG_PSD95.FingR-eGFP-CCR5TC https://www.sciencedirect.com/science/ article/pii/S089662731300319X Addgene AAV9; 46295-AAV9 Chemicals, peptides, and recombinant proteins Pexidartinib (PLX3397) Hölzel Diagnostika Cat# HY-16749 Clodronate disodium salt Millipore Cas# 88416-50-6 Deposited data Extracellular recording data and sorted single unit data This paper https://doi.org/10.12751/g-node.sq1cxy Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy Experimental models: Organisms/strains Mouse: C57Bl/6J Universit€atsklinikum Hamburg- Eppendorf– Animal facility Mouse: C57Bl/6J Mouse: Dlx5/6-Cre (Tg(dlx5a-cre)1Mekk/J Jackson Laboratory RRID: IMSR_JAX:008199 Recombinant DNA pAAV-CAG- 2AtDimer2 Donated by the Oertner lab N/A Software and algorithms Matlab R2019a, R2021a MathWorks RRID:SCR_001622 ImageJ 2.0.0 ImageJ RRID:SCR_003070 R Statistical Software 3.5.1 R Project for Statistical Computing RRID:SCR_001905 Cheetah 6 Neuralynx http://neuralynx.com/ Anaconda 1.9.6 Conda RRID:SCR_018317 Spyder 5.1.5 Spyder RRID:SCR_017585 Jupyter 6.0.0 Jupyter Notebook RRID:SCR_018315 Video Mot2 TSE Systems https://www.tsesystems.com/ productdetails/videomot uEye Cockpit iDS Imaging https://en.ids-imaging.com/ ids-software-suite.html phy Cortex lab https://github.com/cortex-lab/phy klusta Cortex lab https://github.com/kwikteam /klusta ezTrack Cai lab https://github.com/denisecailab/ezTrack Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy (Continued on next page) Neuron 112, 421–440.e1–e7, February 7, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Other Arduino Uno SMD Arduino A000073 Digital Lynx 4SX Neuralynx http://neuralynx.com/ Diode laser (473 nm) Omicron LuxX 473-100 Electroporation device BEX CUY21EX Electroporation tweezer-type paddles Protech CUY650-P5 Recording optrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703-OA16LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-50-703 LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703 LP Recording electrode (1 shank, 16 channels) Neuronexus CM1x16-3mm-100-703 LP Head-stage Neuralynx HS-16-N2T-CNR-MDR50 Confocal microscope Zeiss LSM 700 Mobile HomeCage Neurotar Mobile HomeCage Large with tracking capability Floating foam maze Neurotar Assembled foam sociability cage Lightweight stainless-steel head plates Neurotar Model 3, round 6,2 mm opening Headpost stand Luigs & Neumann 200-200 500 1100 Head post - S (for mice) Luigs & Neumann 200-100 500 2203 ll OPEN ACCESS Article

    Activation Assay:

    Article Title: Aminergic and peptidergic modulation of Insulin-Producing Cells in Drosophila
    Article Snippet: .. DOI: https://doi.org/10.7554/eLife.99548 21 of 31 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Antibody Goat anti- rabbit Alexa Fluor 555 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2535849 Diluted 1:200 Antibody Goat anti- mouse Alexa Fluor 635 (secondary goat polyclonal) ThermoFisher Scientific RRID:AB_2536184 Diluted 1:400 Chemical compound SigmaCote Sigma- Aldrich cat. no. SL2; RRID:SCR_008988 siliconizing reagent Chemical compound Vectashield Antifade Mounting Medium VEC- H- 1000 Biozol - Chemical compound all- trans- retinal Sigma- Aldrich R2500 Used in optogenetic experiments Software, algorithm OCULAR OCULAR Image acquisition software (patch clamp) Software, algorithm Micro- Manager 2.0 for Image J Edelstein et al., 2014 Image acquisition software (calcium imaging) Software, algorithm pCLAMP 10 Molecular Devices Used for recordings (Optogenetic activation and patch clamp) Software, algorithm MATLAB R2021a The Mathworks Used for data analysis and statistical testing Software, algorithm Jupyter Notebook Project Jupyter Pre- processing of calcium imaging data BDSC = Bloomington Drosophila Stock Center. ..

    Stripping Membranes:


    Computed Tomography:

    Article Title: Auditory entrainment coordinates cortical-BNST-NAc triple time locking to alleviate the depressive disorder.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains Human subject Ruijin Hospital of the Shanghai Jiaotong University School of Medicine Table S1 Software and algorithms MATLAB R2022a The MathWorks Inc., Natick, USA RRID:SCR_001622 MATLAB toolbox filedtrip Oostenveld et al.44 https://www.fieldtriptoolbox.org MATLAB toolbox lead-DBS Neudorfer et al.45 RRID:SCR_002915 MATLAB oscillation analysis This paper See the code provided in the supplemental file MATLAB Deep Learning toolbox The MathWorks Inc., Natick, USA https://www.mathworks.com/products/deep-learning.html Adobe Auditor Adobe Audition, USA RRID:SCR_015796 NeuroExplorer Plexon, USA RRID:SCR_001818 Other EEG recording device Brain Products, Germany RRID:SCR_009443 CT scan device Philips CT, Netherlands N/A MRI scan device Philips 3.0T, Netherlands N/A Naturalistic Music EEG Dataset Miyapuram et al.33 https://exhibits.stanford.edu/data/catalog/jn859kj8079 Headphones Philips Audio, SHP9500 N/A Hamilton Depression Rating Scale Zheng et al.46 https://doi.org/10.1192/bjp.152.5.660 Symphony No. 6 in B minor, Op. ..

    Magnetic Resonance Imaging:

    Article Title: Auditory entrainment coordinates cortical-BNST-NAc triple time locking to alleviate the depressive disorder.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains Human subject Ruijin Hospital of the Shanghai Jiaotong University School of Medicine Table S1 Software and algorithms MATLAB R2022a The MathWorks Inc., Natick, USA RRID:SCR_001622 MATLAB toolbox filedtrip Oostenveld et al.44 https://www.fieldtriptoolbox.org MATLAB toolbox lead-DBS Neudorfer et al.45 RRID:SCR_002915 MATLAB oscillation analysis This paper See the code provided in the supplemental file MATLAB Deep Learning toolbox The MathWorks Inc., Natick, USA https://www.mathworks.com/products/deep-learning.html Adobe Auditor Adobe Audition, USA RRID:SCR_015796 NeuroExplorer Plexon, USA RRID:SCR_001818 Other EEG recording device Brain Products, Germany RRID:SCR_009443 CT scan device Philips CT, Netherlands N/A MRI scan device Philips 3.0T, Netherlands N/A Naturalistic Music EEG Dataset Miyapuram et al.33 https://exhibits.stanford.edu/data/catalog/jn859kj8079 Headphones Philips Audio, SHP9500 N/A Hamilton Depression Rating Scale Zheng et al.46 https://doi.org/10.1192/bjp.152.5.660 Symphony No. 6 in B minor, Op. ..

    Virus:

    Article Title: Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Alexa Fluor-488 goat anti-rabbit IgG secondary antibody Thermo Fisher Scientific Cat# A32731, RRID: AB_2633280 Rat monoclonal primary antibody against mouse CD68 Bio-Rad Cat# MCA1957GA, RRID: AB_324217 Rabbit polyclonal primary antibody against Iba1 FUJIFILM Cat# 019-19741, RRID: AB_839504 Alexa Fluor-555 goat anti-rabbit IgG secondary Thermo Fisher Scientific Cat# A32732, RRID: AB_2633281 Alexa Fluor-405 goat anti-rat IgG secondary antibody Abcam Cat# ab175671, RRID: AB_2890626 Bacterial and virus strains AAV9-Ef1alpha-DIO-hChR2(ET/TC)-eYFP https://www.nature.com/articles/nmeth.1808 Addgene AAV9; 35507-AAV9 pCAG_PSD95.FingR-eGFP-CCR5TC https://www.sciencedirect.com/science/ article/pii/S089662731300319X Addgene AAV9; 46295-AAV9 Chemicals, peptides, and recombinant proteins Pexidartinib (PLX3397) Hölzel Diagnostika Cat# HY-16749 Clodronate disodium salt Millipore Cas# 88416-50-6 Deposited data Extracellular recording data and sorted single unit data This paper https://doi.org/10.12751/g-node.sq1cxy Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy Experimental models: Organisms/strains Mouse: C57Bl/6J Universit€atsklinikum Hamburg- Eppendorf– Animal facility Mouse: C57Bl/6J Mouse: Dlx5/6-Cre (Tg(dlx5a-cre)1Mekk/J Jackson Laboratory RRID: IMSR_JAX:008199 Recombinant DNA pAAV-CAG- 2AtDimer2 Donated by the Oertner lab N/A Software and algorithms Matlab R2019a, R2021a MathWorks RRID:SCR_001622 ImageJ 2.0.0 ImageJ RRID:SCR_003070 R Statistical Software 3.5.1 R Project for Statistical Computing RRID:SCR_001905 Cheetah 6 Neuralynx http://neuralynx.com/ Anaconda 1.9.6 Conda RRID:SCR_018317 Spyder 5.1.5 Spyder RRID:SCR_017585 Jupyter 6.0.0 Jupyter Notebook RRID:SCR_018315 Video Mot2 TSE Systems https://www.tsesystems.com/ productdetails/videomot uEye Cockpit iDS Imaging https://en.ids-imaging.com/ ids-software-suite.html phy Cortex lab https://github.com/cortex-lab/phy klusta Cortex lab https://github.com/kwikteam /klusta ezTrack Cai lab https://github.com/denisecailab/ezTrack Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy (Continued on next page) Neuron 112, 421–440.e1–e7, February 7, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Other Arduino Uno SMD Arduino A000073 Digital Lynx 4SX Neuralynx http://neuralynx.com/ Diode laser (473 nm) Omicron LuxX 473-100 Electroporation device BEX CUY21EX Electroporation tweezer-type paddles Protech CUY650-P5 Recording optrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703-OA16LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-50-703 LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703 LP Recording electrode (1 shank, 16 channels) Neuronexus CM1x16-3mm-100-703 LP Head-stage Neuralynx HS-16-N2T-CNR-MDR50 Confocal microscope Zeiss LSM 700 Mobile HomeCage Neurotar Mobile HomeCage Large with tracking capability Floating foam maze Neurotar Assembled foam sociability cage Lightweight stainless-steel head plates Neurotar Model 3, round 6,2 mm opening Headpost stand Luigs & Neumann 200-200 500 1100 Head post - S (for mice) Luigs & Neumann 200-100 500 2203 ll OPEN ACCESS Article

    Recombinant:

    Article Title: Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Alexa Fluor-488 goat anti-rabbit IgG secondary antibody Thermo Fisher Scientific Cat# A32731, RRID: AB_2633280 Rat monoclonal primary antibody against mouse CD68 Bio-Rad Cat# MCA1957GA, RRID: AB_324217 Rabbit polyclonal primary antibody against Iba1 FUJIFILM Cat# 019-19741, RRID: AB_839504 Alexa Fluor-555 goat anti-rabbit IgG secondary Thermo Fisher Scientific Cat# A32732, RRID: AB_2633281 Alexa Fluor-405 goat anti-rat IgG secondary antibody Abcam Cat# ab175671, RRID: AB_2890626 Bacterial and virus strains AAV9-Ef1alpha-DIO-hChR2(ET/TC)-eYFP https://www.nature.com/articles/nmeth.1808 Addgene AAV9; 35507-AAV9 pCAG_PSD95.FingR-eGFP-CCR5TC https://www.sciencedirect.com/science/ article/pii/S089662731300319X Addgene AAV9; 46295-AAV9 Chemicals, peptides, and recombinant proteins Pexidartinib (PLX3397) Hölzel Diagnostika Cat# HY-16749 Clodronate disodium salt Millipore Cas# 88416-50-6 Deposited data Extracellular recording data and sorted single unit data This paper https://doi.org/10.12751/g-node.sq1cxy Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy Experimental models: Organisms/strains Mouse: C57Bl/6J Universit€atsklinikum Hamburg- Eppendorf– Animal facility Mouse: C57Bl/6J Mouse: Dlx5/6-Cre (Tg(dlx5a-cre)1Mekk/J Jackson Laboratory RRID: IMSR_JAX:008199 Recombinant DNA pAAV-CAG- 2AtDimer2 Donated by the Oertner lab N/A Software and algorithms Matlab R2019a, R2021a MathWorks RRID:SCR_001622 ImageJ 2.0.0 ImageJ RRID:SCR_003070 R Statistical Software 3.5.1 R Project for Statistical Computing RRID:SCR_001905 Cheetah 6 Neuralynx http://neuralynx.com/ Anaconda 1.9.6 Conda RRID:SCR_018317 Spyder 5.1.5 Spyder RRID:SCR_017585 Jupyter 6.0.0 Jupyter Notebook RRID:SCR_018315 Video Mot2 TSE Systems https://www.tsesystems.com/ productdetails/videomot uEye Cockpit iDS Imaging https://en.ids-imaging.com/ ids-software-suite.html phy Cortex lab https://github.com/cortex-lab/phy klusta Cortex lab https://github.com/kwikteam /klusta ezTrack Cai lab https://github.com/denisecailab/ezTrack Custom analysis code This paper https://doi.org/10.12751/g-node.sq1cxy (Continued on next page) Neuron 112, 421–440.e1–e7, February 7, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Other Arduino Uno SMD Arduino A000073 Digital Lynx 4SX Neuralynx http://neuralynx.com/ Diode laser (473 nm) Omicron LuxX 473-100 Electroporation device BEX CUY21EX Electroporation tweezer-type paddles Protech CUY650-P5 Recording optrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703-OA16LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-50-703 LP Recording electrode (1 shank, 16 channels) Neuronexus A1x16-5mm-100-703 LP Recording electrode (1 shank, 16 channels) Neuronexus CM1x16-3mm-100-703 LP Head-stage Neuralynx HS-16-N2T-CNR-MDR50 Confocal microscope Zeiss LSM 700 Mobile HomeCage Neurotar Mobile HomeCage Large with tracking capability Floating foam maze Neurotar Assembled foam sociability cage Lightweight stainless-steel head plates Neurotar Model 3, round 6,2 mm opening Headpost stand Luigs & Neumann 200-200 500 1100 Head post - S (for mice) Luigs & Neumann 200-100 500 2203 ll OPEN ACCESS Article



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